Curated BLAST for Genomes

 

Curated BLAST

Searching in Chromobacterium vaccinii MWU205 (GCF_000971335.1)

Found 1 curated entries in PaperBLAST's database that match '1.5.99.8' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Chromobacterium vaccinii MWU205, or try another query

putA VL52_RS18890 WP_046158485.1: trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

59% id,
94% cov

gabD VL52_RS20940 WP_052717556.1: NADP-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

32% id,
34% cov

astD VL52_RS15510 WP_046157871.1: succinylglutamate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
33% cov

VL52_RS21020 WP_046158882.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

31% id,
32% cov

VL52_RS07105 WP_046156382.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
34% cov

VL52_RS11940 WP_046157241.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
33% cov

adh VL52_RS21455 WP_046158953.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

30% id,
32% cov

VL52_RS09630 WP_235429254.1: coniferyl aldehyde dehydrogenase
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

29% id,
33% cov

VL52_RS20535 WP_046158795.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli

26% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

32173-35814 (frame -1) on NZ_JZJL01000047.1 Chromobacterium vaccinii strain MWU205 contig00047, whole genome shotgun sequence
is similar to:
PaperBLAST

putA / GB|BAA35791.1: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; EC 1.5.1.12; EC 1.5.99.8 from Escherichia coli
Also see hits to annotated proteins above

59% id,
95% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory