Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Kangiella geojedonensis YCS-5 (GCF_000981765.1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Kangiella geojedonensis YCS-5, or try another query

TQ33_RS00415 TQ33_0084 WP_046560312.1: D-2-hydroxyacid dehydrogenase is similar to:	PaperBLAST
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	34% id, 86% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	30% id, 88% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	30% id, 88% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	31% id, 84% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	32% id, 79% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	29% id, 84% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	29% id, 85% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	29% id, 85% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	33% id, 75% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	28% id, 86% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	30% id, 81% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	31% id, 75% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	27% id, 83% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	30% id, 74% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	30% id, 73% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	28% id, 76% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	28% id, 76% cov
More...

TQ33_RS04890 TQ33_0974 WP_228640457.1: FAD-binding oxidoreductase is similar to:	PaperBLAST
Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix	29% id, 98% cov
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus	29% id, 94% cov
G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae	27% id, 74% cov

serA TQ33_RS00565 TQ33_0114 WP_046560337.1: phosphoglycerate dehydrogenase is similar to:	PaperBLAST
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	28% id, 99% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	34% id, 81% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	33% id, 82% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	29% id, 94% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	29% id, 94% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	29% id, 86% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	31% id, 78% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	30% id, 81% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	25% id, 93% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	25% id, 93% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	29% id, 81% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	29% id, 81% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	30% id, 76% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	30% id, 75% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	28% id, 82% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	30% id, 75% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	28% id, 79% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	28% id, 77% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	28% id, 76% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	27% id, 77% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	28% id, 75% cov
More...

TQ33_RS03970 TQ33_0790 WP_046562289.1: 4-phosphoerythronate dehydrogenase is similar to:	PaperBLAST
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	26% id, 96% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	25% id, 89% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	28% id, 72% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	26% id, 76% cov
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	23% id, 82% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	25% id, 74% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	27% id, 66% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	25% id, 71% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	28% id, 61% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	28% id, 61% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	26% id, 67% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	28% id, 61% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	24% id, 70% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory