Curated BLAST for Genomes

 

Curated BLAST

Searching in Aurantiacibacter gangjinensis K7-2 (GCF_001010925.1)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Aurantiacibacter gangjinensis K7-2, or try another query

ilvD AAW01_RS03160 AAW01_03165 WP_047005867.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

34% id,
92% cov

PfGW456L13_3320: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens

33% id,
93% cov

SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti

35% id,
89% cov

More...

edd AAW01_RS12290 AAW01_12320 WP_047007750.1: phosphogluconate dehydratase
is similar to:
PaperBLAST

BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans

28% id,
91% cov

ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense

28% id,
86% cov

HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae

29% id,
82% cov

More...

AAW01_RS13390 WP_052765948.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

26% id,
92% cov

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

27% id,
83% cov

AAW01_RS06660 AAW01_06670 WP_047006652.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

25% id,
94% cov

manD AAW01_RS05250 AAW01_05265 WP_047006196.1: D-mannonate dehydratase ManD
is similar to:
PaperBLAST

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

27% id,
85% cov

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

28% id,
34% cov

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii

27% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1090941-1092221 (frame -2) on NZ_LBHC01000001.1 Aurantiacibacter gangjinensis strain K7-2 contig1, whole genome shotgun sequence
is similar to:
PaperBLAST

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
Also see hits to annotated proteins above

26% id,
92% cov

xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
Also see hits to annotated proteins above

26% id,
41% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory