Curated BLAST for Genomes

 

Curated BLAST

Searching in Aurantiacibacter gangjinensis K7-2 (GCF_001010925.1)

Found 8 curated entries in PaperBLAST's database that match '5.3.1.12' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Aurantiacibacter gangjinensis K7-2, or try another query

uxaC AAW01_RS05315 AAW01_05330 WP_047006207.1: glucuronate isomerase
is similar to:
PaperBLAST

CA265_RS19870: Glucuronate isomerase (EC 5.3.1.12) from Pedobacter sp.

30% id,
99% cov

UXAC_THEMA / Q9WXR9: Uronate isomerase; D-GalA/D-TagA isomerase; D-GlcA/D-FruA isomerase; Glucuronate isomerase; Hexuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Thermotoga maritima
uxaC / Q9WXR9: hexuronate isomerase monomer (EC 5.3.1.12) from Thermotoga maritima

29% id,
98% cov

UXAC_ECOLI / P0A8G3: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Escherichia coli
YgjZ / b3092: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
uxaC / P0A8G3: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
A0A140N3B4: glucuronate isomerase (EC 5.3.1.12) from Escherichia coli

30% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory