Curated BLAST for Genomes

 

Curated BLAST

Searching in Novosphingobium barchaimii LL02 (GCF_001046635.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Novosphingobium barchaimii LL02, or try another query

V474_RS13885 V474_20320 WP_059152026.1: homoserine dehydrogenase
is similar to:
PaperBLAST

Ga0059261_2711: homoserine dehydrogenase (EC 1.1.1.3) from Sphingomonas koreensis

69% id,
100% cov

DHOM_NEIG1 / Q5F8J4: Homoserine dehydrogenase; HDH; HSD; NAD(+)-dependent homoserine dehydrogenase; NAD(+)-dependent HSD; NgHSD; EC 1.1.1.3 from Neisseria gonorrhoeae

45% id,
98% cov

P46806: homoserine dehydrogenase (EC 1.1.1.3) from Mycobacterium leprae

43% id,
98% cov

More...

V474_RS14540 V474_21010 WP_201786053.1: aspartate kinase
is similar to:
PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

38% id,
53% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

31% id,
41% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

31% id,
42% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

60015-61478 (frame +3) on NZ_KQ130462.1 Novosphingobium barchaimii LL02 25411_scaffold_11, whole genome shotgun sequence
is similar to:
PaperBLAST

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.
Also see hits to annotated proteins above

22% id,
56% cov

O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max
Also see hits to annotated proteins above

22% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory