Curated BLAST for Genomes

 

Curated BLAST

Searching in Novosphingobium barchaimii LL02 (GCF_001046635.1)

Found 34 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Novosphingobium barchaimii LL02, or try another query

V474_RS17425 V474_24040 WP_059152706.1: prephenate dehydratase
is similar to:
PaperBLAST

Q5NLV8: prephenate dehydratase (EC 4.2.1.51) from Zymomonas mobilis

53% id,
90% cov

GQQA_KOMEU / A0A0M0ELU2: Bifunctional N-acyl-homoserine lactone acylase/prephenate dehydratase; Bifunctional AHL acylase/PDT; Quorum quenching protein GqqA; EC 3.5.1.97; EC 4.2.1.51 from Komagataeibacter europaeus

46% id,
96% cov

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

32% id,
99% cov

More...

V474_RS13280 V474_19695 WP_059151930.1: threonine ammonia-lyase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

33% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

152502-153491 (frame -2) on NZ_KQ130456.1 Novosphingobium barchaimii LL02 25411_scaffold_05, whole genome shotgun sequence
is similar to:
PaperBLAST

Q5NLV8: prephenate dehydratase (EC 4.2.1.51) from Zymomonas mobilis
Also see hits to annotated proteins above

53% id,
91% cov

Q6Z3Y3: prephenate dehydratase (EC 4.2.1.51) from Oryza sativa
Also see hits to annotated proteins above

36% id,
93% cov

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC 4.2.1.51; EC 4.2.1.91 from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
83% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory