Curated BLAST for Genomes

 

Curated BLAST

Searching in Novosphingobium barchaimii LL02 (GCF_001046635.1)

Found 61 curated entries in PaperBLAST's database that match '5.4.99.5' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Novosphingobium barchaimii LL02, or try another query

trpE V474_RS03180 V474_08765 WP_059150076.1: anthranilate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

28% id,
92% cov

V474_RS17425 V474_24040 WP_059152706.1: prephenate dehydratase
is similar to:
PaperBLAST

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

33% id,
72% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

32% id,
72% cov

CMPDT_STUST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Stutzerimonas stutzeri

29% id,
75% cov

More...

pabB V474_RS13600 V474_20030 WP_059151980.1: aminodeoxychorismate synthase component I
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

29% id,
56% cov

V474_RS01455 V474_01475 WP_059149791.1: chorismate mutase
is similar to:
PaperBLAST

CA265_RS11635: chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Pedobacter sp.

34% id,
23% cov

V474_RS13280 V474_19695 WP_059151930.1: threonine ammonia-lyase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

33% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

295366-296871 (frame -3) on NZ_KQ130452.1 Novosphingobium barchaimii LL02 25411_scaffold_01, whole genome shotgun sequence
is similar to:
PaperBLAST

CA265_RS11635: chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) from Pedobacter sp.
Also see hits to annotated proteins above

31% id,
32% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory