Curated BLAST for Genomes

 

Curated BLAST

Searching in Novosphingobium barchaimii LL02 (GCF_001046635.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxy acid synthase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Novosphingobium barchaimii LL02, or try another query

ilvB V474_RS04395 V474_10015 WP_059150772.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

49% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

48% id,
95% cov

V474_RS02810 V474_08390 WP_059150016.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

31% id,
94% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

30% id,
88% cov

V474_RS07700 V474_13970 WP_059150953.1: thiamine pyrophosphate-dependent enzyme
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

29% id,
95% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

28% id,
91% cov

V474_RS12945 V474_19350 WP_059151876.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

27% id,
89% cov

V474_RS08230 V474_14520 WP_059151041.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

25% id,
92% cov

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

31% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

868366-870246 (frame +1) on NZ_KQ130452.1 Novosphingobium barchaimii LL02 25411_scaffold_01, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

49% id,
98% cov

544352-546139 (frame +2) on NZ_KQ130452.1 Novosphingobium barchaimii LL02 25411_scaffold_01, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

31% id,
96% cov

509894-511690 (frame +2) on NZ_KQ130454.1 Novosphingobium barchaimii LL02 25411_scaffold_03, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

27% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory