Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingobium cupriresistens LL01 (GCF_001046645.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.5.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sphingobium cupriresistens LL01, or try another query

V473_RS16930 V473_18710 WP_330219425.1: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

43% id,
98% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

41% id,
98% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

40% id,
97% cov

V473_RS05685 V473_05905 WP_066601391.1: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

42% id,
98% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

40% id,
99% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

39% id,
98% cov

V473_RS05715 V473_05935 WP_082678981.1: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

41% id,
98% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

41% id,
99% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

38% id,
99% cov

V473_RS10790 V473_12270 WP_066603708.1: PQQ-dependent sugar dehydrogenase
is similar to:
PaperBLAST

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

34% id,
85% cov

V473_RS20540 V473_22460 WP_244884569.1: PQQ-dependent dehydrogenase, methanol/ethanol family
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

27% id,
81% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

28% id,
43% cov

V473_RS20030 V473_21945 WP_082679258.1: PQQ-binding-like beta-propeller repeat protein
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

34% id,
60% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

33% id,
59% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

32% id,
57% cov

More...

V473_RS20685 V473_22605 WP_066609192.1: PQQ-dependent dehydrogenase, methanol/ethanol family
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

29% id,
59% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

27% id,
48% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

27% id,
35% cov

More...

V473_RS00140 V473_00160 WP_066599006.1: methanol/ethanol family PQQ-dependent dehydrogenase
is similar to:
PaperBLAST

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

31% id,
33% cov

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

29% id,
29% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

34% id,
13% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory