Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingobium cupriresistens LL01 (GCF_001046645.1)

Found 32 curated entries in PaperBLAST's database that match '2.6.1.13' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sphingobium cupriresistens LL01, or try another query

V473_RS02290 V473_02385 WP_066600058.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 46% id,
94% cov

Echvi_0577: Ornithine aminotransferase (EC 2.6.1.13) from Echinicola vietnamensis

 36% id,
92% cov

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

 36% id,
90% cov

More...

V473_RS20290 V473_22205 WP_066609126.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 29% id,
99% cov

OAT_PLAF7 / Q6LFH8: Ornithine aminotransferase; PfOAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum
Q6LFH8: ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum

 28% id,
99% cov

Echvi_0577: Ornithine aminotransferase (EC 2.6.1.13) from Echinicola vietnamensis

 28% id,
100% cov

More...

ectB V473_RS18720 V473_20570 WP_066608605.1: diaminobutyrate--2-oxoglutarate transaminase
is similar to:		 PaperBLAST

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 30% id,
94% cov

ORNAT_PYRHO / O50131: Ornithine aminotransferase; Orn-AT; Ornithine delta-aminotransferase; EC 2.6.1.13 from Pyrococcus horikoshii

 30% id,
89% cov

Q3ZCF5: ornithine aminotransferase (EC 2.6.1.13) from Bos taurus

 28% id,
94% cov

More...

V473_RS00850 V473_00895 WP_066599360.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:		 PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

 29% id,
94% cov

aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa

 29% id,
90% cov

OAT_YEAST / P07991: Ornithine aminotransferase; OTAse; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

 27% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

174723-176039 (frame -2) on NZ_KQ130434.1 Sphingobium cupriresistens LL01 25410_scaffold_01, whole genome shotgun sequence
is similar to:		 PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis
Also see hits to annotated proteins above

 29% id,
96% cov

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis
Also see hits to annotated proteins above

 27% id,
90% cov

A0A5F9CII4: ornithine aminotransferase (EC 2.6.1.13) from Oryctolagus cuniculus
Also see hits to annotated proteins above

 26% id,
87% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory