Curated BLAST for Genomes

 

Curated BLAST

Searching in Sphingobium cupriresistens LL01 (GCF_001046645.1)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.30' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sphingobium cupriresistens LL01, or try another query

V473_RS11880 V473_13375 WP_066605606.1: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

35% id,
96% cov

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

34% id,
96% cov

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

34% id,
96% cov

More...

aguB V473_RS09535 V473_09920 WP_066603038.1: N-carbamoylputrescine amidase
is similar to:
PaperBLAST

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

33% id,
95% cov

Pf1N1B4_2504: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

31% id,
95% cov

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

32% id,
93% cov

More...

V473_RS15785 V473_17520 WP_066606969.1: NAD+ synthase
is similar to:
PaperBLAST

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

28% id,
98% cov

V473_RS11040 V473_12520 WP_066605523.1: bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

30% id,
91% cov

AO356_14225: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

29% id,
91% cov

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

29% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory