Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum autotrophicum IAM 14942 (GCF_001189915.1)

Found 80 curated entries in PaperBLAST's database that match '2.5.1.47' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Herbaspirillum autotrophicum IAM 14942, or try another query

cysM AKL27_RS03870 WP_050461457.1: cysteine synthase CysM
is similar to:		 PaperBLAST

P29848: S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) (EC 2.5.1.144); cysteine synthase (EC 2.5.1.47) from Salmonella enterica

 63% id,
96% cov

CYSM_ECOLI / P16703: Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 from Escherichia coli
CysM / b2421: cysteine synthase B (EC 2.5.1.47; EC 2.5.1.144; EC 4.4.1.1; EC 4.4.1.28) from Escherichia coli
cysM / P16703: cysteine synthase B (EC 2.5.1.47; EC 2.5.1.144; EC 4.4.1.1) from Escherichia coli

 62% id,
96% cov

CYSK_SYNE7 / Q59966: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; O-acetylserine sulfhydrylase; EC 2.5.1.47 from Synechococcus elongatus

 47% id,
93% cov

More...

AKL27_RS02665 WP_050461123.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

 50% id,
97% cov

AKL27_RS11895 WP_050463125.1: cystathionine gamma-synthase family protein
is similar to:		 PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

 32% id,
97% cov

ilvA AKL27_RS10590 WP_050462793.1: threonine ammonia-lyase, biosynthetic
is similar to:		 PaperBLAST

A0A2H5HU77: cysteine synthase (EC 2.5.1.47) from Lathyrus sativus

 27% id,
94% cov

Q9XEA8: cysteine synthase (EC 2.5.1.47) from Oryza sativa

 27% id,
93% cov

A3RM06: cysteine synthase (EC 2.5.1.47) from Glycine max

 26% id,
95% cov

More...

AKL27_RS17765 WP_050464188.1: threonine ammonia-lyase
is similar to:		 PaperBLAST

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

 27% id,
96% cov

CYSC1_ARATH / Q9S757: Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial; Beta-substituted Ala synthase 3;1; ARAth-Bsas3;1; Cysteine synthase C1; AtCYSC1; O-acetylserine (thiol)-lyase 5; EC 2.5.1.47; EC 4.4.1.9 from Arabidopsis thaliana

 27% id,
78% cov

AKL27_RS23645 WP_050465337.1: diaminopropionate ammonia-lyase
is similar to:		 PaperBLAST

CYSK_MYCTU / P9WP55: O-acetylserine sulfhydrylase; OAS sulfhydrylase; OASS; Cysteine synthase A; CSase A; O-acetylserine (thiol)-lyase A; OAS-TL A; O-acetylserine-specific cysteine synthase; Sulfide-dependent cysteine synthase; EC 2.5.1.47 from Mycobacterium tuberculosis
P9WP55: cysteine synthase (EC 2.5.1.47) from Mycobacterium tuberculosis

 25% id,
79% cov

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

 23% id,
81% cov

Q84IF9: cysteine synthase (EC 2.5.1.47); L-3-cyanoalanine synthase (EC 4.4.1.9) from Geobacillus stearothermophilus

 22% id,
81% cov

More...

metC AKL27_RS11300 WP_050462928.1: cystathionine beta-lyase
is similar to:		 PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

 36% id,
48% cov

trpB AKL27_RS11930 WP_050463049.1: tryptophan synthase subunit beta
is similar to:		 PaperBLAST

Q84IF9: cysteine synthase (EC 2.5.1.47); L-3-cyanoalanine synthase (EC 4.4.1.9) from Geobacillus stearothermophilus

 39% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

81812-83047 (frame -3) on NZ_LFLS01000023.1 Herbaspirillum autotrophicum strain IAM 14942 contig23, whole genome shotgun sequence
is similar to:		 PaperBLAST

CYSKP_ARATH / P47999: Cysteine synthase, chloroplastic/chromoplastic; At.OAS.7-4; Beta-substituted Ala synthase 2;1; ARAth-Bsas2;1; CSase B; AtCS-B; CS-B; O-acetylserine (thiol)-lyase; O-acetylserine sulfhydrylase; OAS-TL B; cpACS1; EC 2.5.1.47 from Arabidopsis thaliana
OASB / P47999: O-acetylserine (thiol) lyase (EC 2.5.1.47) from Arabidopsis thaliana
P47999: cysteine synthase (EC 2.5.1.47) from Arabidopsis thaliana
Also see hits to annotated proteins above

 25% id,
75% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory