Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum autotrophicum IAM 14942 (GCF_001189915.1)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.81' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Herbaspirillum autotrophicum IAM 14942, or try another query

AKL27_RS12160 WP_050463092.1: acetylornithine transaminase
is similar to:		 PaperBLAST

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

 42% id,
92% cov

Pf1N1B4_3440: Succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas fluorescens

 40% id,
97% cov

A0A140N9B6: succinylornithine transaminase (EC 2.6.1.81) from Escherichia coli

 44% id,
88% cov

More...

gabT AKL27_RS02370 WP_050461046.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:		 PaperBLAST

BT3758: N-succinylornithine aminotransferase (EC 2.6.1.81) from Bacteroides thetaiotaomicron

 35% id,
98% cov

Echvi_3848: N-succinylornithine aminotransferase (EC 2.6.1.81) from Echinicola vietnamensis

 33% id,
98% cov

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium

 36% id,
90% cov

More...

AKL27_RS14040 WP_050463502.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

 32% id,
94% cov

A0A140N9B6: succinylornithine transaminase (EC 2.6.1.81) from Escherichia coli

 31% id,
95% cov

ASTC_ECOLI / P77581: Succinylornithine transaminase; SOAT; Carbon starvation protein C; Succinylornithine aminotransferase; EC 2.6.1.81 from Escherichia coli
AstC / b1748: succinylornithine transaminase (EC 2.6.1.81; EC 2.6.1.11) from Escherichia coli
astC / RF|NP_416262.1: succinylornithine transaminase; EC 2.6.1.81 from Escherichia coli
astC / P77581: succinylornithine transaminase (EC 2.6.1.81; EC 2.6.1.11) from Escherichia coli

 31% id,
95% cov

More...

AKL27_RS23170 WP_050465246.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium

 31% id,
93% cov

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

 29% id,
96% cov

BT3758: N-succinylornithine aminotransferase (EC 2.6.1.81) from Bacteroides thetaiotaomicron

 29% id,
97% cov

More...

AKL27_RS15605 WP_050463825.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

Pf1N1B4_3440: Succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas fluorescens

 30% id,
95% cov

PS417_21710: Succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas simiae

 28% id,
98% cov

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

 29% id,
96% cov

More...

bioA AKL27_RS02290 WP_050461022.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:		 PaperBLAST

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium

 29% id,
94% cov

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

 27% id,
98% cov

HP15_3042: acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) from Marinobacter adhaerens

 26% id,
92% cov

More...

hemL AKL27_RS21710 WP_050464957.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

ARUC_PSEAE / O30508: Succinylornithine transaminase/acetylornithine aminotransferase; ACOAT; SOAT; Succinylornithine aminotransferase; EC 2.6.1.11; EC 2.6.1.81 from Pseudomonas aeruginosa
aruC / O30508: succinylornithine transaminase subunit (EC 2.6.1.13; EC 2.6.1.11; EC 2.6.1.81) from Pseudomonas aeruginosa
O30508: succinylornithine transaminase (EC 2.6.1.81) from Pseudomonas aeruginosa

 29% id,
93% cov

BWI76_RS11670: Succinylornithine transaminase (EC 2.6.1.81) from Klebsiella michiganensis

 29% id,
94% cov

HP15_3042: acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) from Marinobacter adhaerens

 27% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

13038-14393 (frame -2) on NZ_LFLS01000039.1 Herbaspirillum autotrophicum strain IAM 14942 contig39, whole genome shotgun sequence
is similar to:		 PaperBLAST

ASTC_SALTY / Q8ZPV2: Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81 from Salmonella typhimurium
Also see hits to annotated proteins above

 30% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory