Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum autotrophicum IAM 14942 (GCF_001189915.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Herbaspirillum autotrophicum IAM 14942, or try another query

thrC AKL27_RS07655 WP_050462303.1: threonine synthase
is similar to:
PaperBLAST

Q2SWH9: threonine synthase (EC 4.2.3.1) from Burkholderia thailandensis

72% id,
100% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC 4.2.3.1 from Corynebacterium glutamicum

57% id,
98% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

42% id,
100% cov

More...

AKL27_RS17765 WP_050464188.1: threonine ammonia-lyase
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

28% id,
84% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
82% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

26% id,
87% cov

More...

ilvA AKL27_RS10590 WP_050462793.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

27% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory