Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum autotrophicum IAM 14942 (GCF_001189915.1)

Found 1 curated entries in PaperBLAST's database that match '2-deoxy-3-keto-D-ribonoate cleavage enzyme' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Herbaspirillum autotrophicum IAM 14942, or try another query

AKL27_RS18645 WP_050464367.1: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

PS417_07250: 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae

77% id,
100% cov

AKL27_RS00705 WP_050460643.1: 3-keto-5-aminohexanoate cleavage protein
is similar to:
PaperBLAST

PS417_07250: 2-deoxy-3-keto-D-ribonoate cleavage enzyme from Pseudomonas simiae

36% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory