Curated BLAST for Genomes

 

Curated BLAST

Searching in Herbaspirillum autotrophicum IAM 14942 (GCF_001189915.1)

Found 3 curated entries in PaperBLAST's database that match 'N-succinylcitrulline desuccinylase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Herbaspirillum autotrophicum IAM 14942, or try another query

argE AKL27_RS00570 WP_050460811.1: acetylornithine deacetylase
is similar to:
PaperBLAST

CA265_RS18500: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Pedobacter sp.

24% id,
97% cov

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron

29% id,
71% cov

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

24% id,
73% cov

AKL27_RS23665 WP_050465341.1: YgeY family selenium metabolism-linked hydrolase
is similar to:
PaperBLAST

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron

24% id,
84% cov

dapE AKL27_RS10350 WP_050462735.1: succinyl-diaminopimelate desuccinylase
is similar to:
PaperBLAST

BT3549: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Bacteroides thetaiotaomicron

21% id,
90% cov

AKL27_RS09075 WP_050462491.1: M20/M25/M40 family metallo-hydrolase
is similar to:
PaperBLAST

Echvi_3851: N-succinylcitrulline desuccinylase (EC 3.5.1.-) from Echinicola vietnamensis

25% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory