Curated BLAST for Genomes

 

Curated BLAST

Searching in Amantichitinum ursilacus IGB-41 (GCF_001294205.1)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Amantichitinum ursilacus IGB-41, or try another query

WG78_RS18835 WG78_19005 WP_053939388.1: arginine/lysine/ornithine decarboxylase
is similar to:
PaperBLAST

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

33% id,
95% cov

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Levilactobacillus brevis

35% id,
91% cov

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

34% id,
91% cov

More...

lysA WG78_RS06830 WG78_06855 WP_053937065.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

23% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory