Curated BLAST for Genomes

 

Curated BLAST

Searching in Amantichitinum ursilacus IGB-41 (GCF_001294205.1)

Found 11 curated entries in PaperBLAST's database that match '4.2.1.41' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Amantichitinum ursilacus IGB-41, or try another query

dapA WG78_RS10295 WG78_10400 WP_053937735.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans

26% id,
96% cov

B7WZA5: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni

25% id,
96% cov

HSERO_RS15785: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae

26% id,
90% cov

More...

dapA WG78_RS09370 WG78_09460 WP_053937547.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

A1VMN2: 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans

24% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory