Curated BLAST for Genomes

 

Curated BLAST

Searching in Amantichitinum ursilacus IGB-41 (GCF_001294205.1)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Amantichitinum ursilacus IGB-41, or try another query

WG78_RS01020 WG78_01035 WP_053935921.1: altronate dehydratase family protein
is similar to:		 PaperBLAST

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

 30% id,
96% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

 29% id,
95% cov

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

 33% id,
76% cov

rhmD WG78_RS08815 WG78_08895 WP_053937448.1: L-rhamnonate dehydratase
is similar to:		 PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

 28% id,
85% cov

dgoD WG78_RS07230 WG78_07260 WP_053937133.1: galactonate dehydratase
is similar to:		 PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

 27% id,
80% cov

dgoD WG78_RS19245 WG78_19410 WP_053939463.1: galactonate dehydratase
is similar to:		 PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

 30% id,
67% cov

WG78_RS15640 WG78_15780 WP_053938777.1: D-galactonate dehydratase family protein
is similar to:		 PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

 33% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory