Curated BLAST for Genomes

 

Curated BLAST

Searching in Amantichitinum ursilacus IGB-41 (GCF_001294205.1)

Found 44 curated entries in PaperBLAST's database that match '6.2.1.1' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Amantichitinum ursilacus IGB-41, or try another query

acs WG78_RS08045 WG78_08115 WP_053937296.1: acetate--CoA ligase
is similar to:
PaperBLAST

ACSA_CUPNH / P31638: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Cupriavidus necator
acsA / P31638: acetyl-CoA synthetase (EC 6.2.1.1; EC 6.2.1.17) from Cupriavidus necator

69% id,
100% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

54% id,
98% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

56% id,
95% cov

More...

fadD WG78_RS10575 WG78_10675 WP_053937789.1: long-chain-fatty-acid--CoA ligase FadD
is similar to:
PaperBLAST

facA: acetyl-coenzyme A synthetase; EC 6.2.1.1 from Emericella nidulans

25% id,
82% cov

CCL4 / M4IQQ5: isobutanoate/2-methylbutanoate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

32% id,
64% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

28% id,
69% cov

More...

WG78_RS05475 WG78_05505 WP_053936788.1: AMP-binding protein
is similar to:
PaperBLAST

acs1 / Q2LWR8: acetate—CoA ligase (EC 6.2.1.1) from Syntrophus aciditrophicus

21% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory