Curated BLAST for Genomes

 

Curated BLAST

Searching in Paenacidovorax caeni R-24608 (GCF_001298675.1)

Found 41 curated entries in PaperBLAST's database that match '1.2.1.10' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paenacidovorax caeni R-24608, or try another query

BN2503_RS10275 WP_054256565.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

33% id,
46% cov

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

32% id,
46% cov

A0A1D3TRQ6: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Anaerobium acetethylicum

29% id,
46% cov

More...

BN2503_RS09190 WP_054256358.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

B0K4A2: alcohol dehydrogenase (EC 1.1.1.1); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacter sp.

26% id,
43% cov

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

26% id,
43% cov

adh2 / GB|AAA81906.1: aldehyde-alcohol dehydrogenase 2; EC 1.1.1.1; EC 1.2.1.10 from Entamoeba histolytica

26% id,
35% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

32098-33366 (frame +1) on NZ_CYIG01000017.1 Paenacidovorax caeni strain R-24608 isolate Acidovorax caeni sp. nov. strain R-24608, whole genome shotgun sequence
is similar to:
PaperBLAST

A0A0H3W5K4: acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum
Also see hits to annotated proteins above

26% id,
45% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory