Curated BLAST for Genomes

 

Curated BLAST

Searching in Aquimarina longa SW024 (GCF_001401755.1)

Found 42 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Aquimarina longa SW024, or try another query

gdhA N456_RS11775 WP_062057113.1: NADP-specific glutamate dehydrogenase
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

59% id,
100% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from [Clostridium] symbiosum

54% id,
100% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

34% id,
92% cov

More...

N456_RS22095 WP_062062261.1: Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein
is similar to:
PaperBLAST

GUDB_BACSU / P50735: Cryptic catabolic NAD-specific glutamate dehydrogenase GudB; NAD-GDH; EC 1.4.1.2 from Bacillus subtilis

22% id,
88% cov

Q852M0: glutamate dehydrogenase (EC 1.4.1.2) from Oryza sativa

27% id,
72% cov

DHE2_PYRCJ / A3MUY9: NAD(+)-dependent glutamate dehydrogenase; NAD-GDH; NAD-specific glutamate dehydrogenase; EC 1.4.1.2 from Pyrobaculum calidifontis
A3MUY9: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum calidifontis

26% id,
75% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory