Curated BLAST for Genomes

 

Curated BLAST

Searching in Aquimarina longa SW024 (GCF_001401755.1)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Aquimarina longa SW024, or try another query

N456_RS13080 WP_062057831.1: proline dehydrogenase family protein
is similar to:
PaperBLAST

CA265_RS11605: Proline dehydrogenase (EC 1.5.5.2) from Pedobacter sp.

48% id,
98% cov

Echvi_0119: Proline dehydrogenase (EC 1.5.5.2) from Echinicola vietnamensis

45% id,
96% cov

PROD2_ARATH / Q6NKX1: Proline dehydrogenase 2, mitochondrial; Osmotic stress-induced proline dehydrogenase; Proline oxidase; EC 1.5.5.2 from Arabidopsis thaliana
POX2 / Q6NKX1: proline dehydrogenase 2 (EC 1.5.5.2) from Arabidopsis thaliana

34% id,
61% cov

More...

lpdA N456_RS18595 WP_062060408.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

24% id,
75% cov

N456_RS09415 WP_062056239.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

22% id,
61% cov

N456_RS00600 WP_148639127.1: TIGR03364 family FAD-dependent oxidoreductase
is similar to:
PaperBLAST

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

22% id,
59% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

23% id,
54% cov

N456_RS01240 WP_062053068.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

29% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

30% id,
41% cov

More...

pruA N456_RS22400 WP_062062443.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
46% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
44% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

28% id,
44% cov

More...

N456_RS08060 WP_062055749.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
46% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
43% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

28% id,
44% cov

More...

N456_RS05125 WP_062054604.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

26% id,
47% cov

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

44% id,
10% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

44% id,
10% cov

More...

paaZ N456_RS00470 WP_062052752.1: phenylacetic acid degradation bifunctional protein PaaZ
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

23% id,
40% cov

N456_RS01325 WP_062053102.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

24% id,
33% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

24% id,
33% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

24% id,
33% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

16617-18131 (frame -1) on NZ_AVQK01000014.1 Aquimarina longa SW024 contig14, whole genome shotgun sequence
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis
Also see hits to annotated proteins above

28% id,
48% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis
Also see hits to annotated proteins above

28% id,
48% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.
Also see hits to annotated proteins above

27% id,
48% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory