Curated BLAST for Genomes

 

Curated BLAST

Searching in Aquimarina longa SW024 (GCF_001401755.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Aquimarina longa SW024, or try another query

tpiA N456_RS21390 WP_062061912.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens

48% id,
100% cov

TPIS_DROME / P29613: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster

47% id,
98% cov

TPIS_RABIT / P00939: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Oryctolagus cuniculus
P00939: triose-phosphate isomerase (EC 5.3.1.1) from Oryctolagus cuniculus

47% id,
98% cov

More...

N456_RS06325 WP_062055072.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

51% id,
60% cov

N456_RS16225 WP_062059532.1: nitronate monooxygenase
is similar to:
PaperBLAST

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

33% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory