Curated BLAST for Genomes

 

Curated BLAST

Searching in Roseburia faecis M72 (GCF_001406815.1)

Found 8 curated entries in PaperBLAST's database that match '6.3.1.1' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Roseburia faecis M72, or try another query

asnA M72_RS13405 M72_13851 WP_022046005.1: aspartate--ammonia ligase
is similar to:
PaperBLAST

ASNA_ECOLI / P00963: Aspartate--ammonia ligase; Asparagine synthetase A; EC 6.3.1.1 from Escherichia coli
AsnA / b3744: asparagine synthetase A (EC 6.3.1.1) from Escherichia coli
asnA / P00963: asparagine synthetase A (EC 6.3.1.1) from Escherichia coli

44% id,
98% cov

Q57WT9: aspartate-ammonia ligase (EC 6.3.1.1) from Trypanosoma brucei

46% id,
61% cov

Q57WT9: aspartate-ammonia ligase (EC 6.3.1.1) from Trypanosoma brucei

54% id,
26% cov

asnS M72_RS04250 M72_23131 WP_022046258.1: asparagine--tRNA ligase
is similar to:
PaperBLAST

Q9V228: asparagine-tRNA ligase (EC 6.1.1.22); aspartate-ammonia ligase (EC 6.3.1.1) from Pyrococcus abyssi

28% id,
76% cov

asnB M72_RS05350 M72_25391 WP_055067462.1: asparagine synthase (glutamine-hydrolyzing)
is similar to:
PaperBLAST

AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

23% id,
75% cov

AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

38% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory