Curated BLAST for Genomes

 

Curated BLAST

Searching in Lacinutrix algicola AKS293 (GCF_001418085.1)

Found 39 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Lacinutrix algicola AKS293, or try another query

thrA ASC41_RS14495 WP_055437364.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:
PaperBLAST

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

46% id,
100% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

45% id,
100% cov

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

45% id,
100% cov

More...

thrA ASC41_RS02630 WP_055435097.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:
PaperBLAST

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

36% id,
100% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

36% id,
99% cov

DHOM_EMENI / Q5B998: Homoserine dehydrogenase; HDH; HSD; EC 1.1.1.3 from Emericella nidulans
AN2882: homoserine dehydrogenase; EC 1.1.1.3 from Emericella nidulans

36% id,
100% cov

More...

ASC41_RS09190 WP_055436340.1: aspartate kinase
is similar to:
PaperBLAST

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

32% id,
54% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

29% id,
56% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

28% id,
57% cov

More...

ASC41_RS07585 WP_055436038.1: aspartate kinase
is similar to:
PaperBLAST

CA265_RS23475: aspartate kinase; homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Pedobacter sp.

31% id,
46% cov

BT2403: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Bacteroides thetaiotaomicron

30% id,
49% cov

Echvi_2000: aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) from Echinicola vietnamensis

30% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory