Curated BLAST for Genomes

 

Curated BLAST

Searching in Lacinutrix algicola AKS293 (GCF_001418085.1)

Found 1 curated entries in PaperBLAST's database that match '1.3.99.10' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Lacinutrix algicola AKS293, or try another query

ASC41_RS03630 WP_055435285.1: acyl-CoA dehydrogenase
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

40% id,
89% cov

ASC41_RS03050 WP_055435174.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

35% id,
89% cov

ASC41_RS15620 WP_055437597.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

34% id,
89% cov

ASC41_RS01020 WP_055434784.1: acyl-CoA dehydrogenase family protein
is similar to:
PaperBLAST

ivdA: isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans

31% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory