Curated BLAST for Genomes

 

Curated BLAST

Searching in Lacinutrix algicola AKS293 (GCF_001418085.1)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Lacinutrix algicola AKS293, or try another query

ASC41_RS14050 WP_055437284.1: proline dehydrogenase family protein
is similar to:
PaperBLAST

CA265_RS11605: Proline dehydrogenase (EC 1.5.5.2) from Pedobacter sp.

50% id,
97% cov

Echvi_0119: Proline dehydrogenase (EC 1.5.5.2) from Echinicola vietnamensis

47% id,
98% cov

PROD2_ARATH / Q6NKX1: Proline dehydrogenase 2, mitochondrial; Osmotic stress-induced proline dehydrogenase; Proline oxidase; EC 1.5.5.2 from Arabidopsis thaliana
POX2 / Q6NKX1: proline dehydrogenase 2 (EC 1.5.5.2) from Arabidopsis thaliana

37% id,
55% cov

More...

lpdA ASC41_RS12550 WP_055436988.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
76% cov

ASC41_RS08085 WP_055436134.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

29% id,
44% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
45% cov

More...

pruA ASC41_RS01960 WP_055434958.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
46% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

28% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
44% cov

More...

ASC41_RS11440 WP_055436782.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
45% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

28% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

27% id,
43% cov

More...

ASC41_RS13180 WP_055437407.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
45% cov

More...

ASC41_RS05615 WP_055435763.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

28% id,
44% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

29% id,
42% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
42% cov

More...

ASC41_RS15120 WP_055437500.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

25% id,
43% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

25% id,
43% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

25% id,
43% cov

More...

ASC41_RS13805 WP_055437237.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

25% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

25% id,
43% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

24% id,
43% cov

More...

paaZ ASC41_RS02345 WP_055435027.1: phenylacetic acid degradation bifunctional protein PaaZ
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

23% id,
45% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

24% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

24% id,
40% cov

More...

ASC41_RS01675 WP_055434908.1: glutamate synthase subunit beta
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
42% cov

ASC41_RS12670 WP_055437011.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

25% id,
40% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

25% id,
40% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
32% cov

More...

ASC41_RS04395 WP_055435422.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

30% id,
20% cov

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

28% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

185073-187601 (frame +3) on NZ_LIQH01000021.1 Lacinutrix algicola strain AKS293 ctg7180000000507, whole genome shotgun sequence
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri
Also see hits to annotated proteins above

24% id,
48% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis
Also see hits to annotated proteins above

23% id,
46% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.
Also see hits to annotated proteins above

23% id,
46% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory