Curated BLAST for Genomes

 

Curated BLAST

Searching in Lacinutrix algicola AKS293 (GCF_001418085.1)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.17' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Lacinutrix algicola AKS293, or try another query

serC ASC41_RS14140 WP_055437300.1: 3-phosphoserine/phosphohydroxythreonine transaminase
is similar to:
PaperBLAST

SerC / b0907: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli
serC / P23721: phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli

41% id,
98% cov

rocD ASC41_RS11700 WP_055436832.1: ornithine--oxo-acid transaminase
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

33% id,
98% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

34% id,
91% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

34% id,
90% cov

ASC41_RS09125 WP_055436331.1: methionine aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

32% id,
96% cov

ASC41_RS04930 WP_055435532.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

32% id,
96% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

32% id,
89% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

30% id,
92% cov

ASC41_RS01645 WP_055434904.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

32% id,
95% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

33% id,
92% cov

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

37% id,
81% cov

ASC41_RS05550 WP_055435649.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

28% id,
97% cov

ASC41_RS05720 WP_055435681.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

DAPC_MYCTU / P9WPZ5: Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis
P9WPZ5: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis

28% id,
96% cov

hemL ASC41_RS00020 WP_055434605.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

ARGD_SALTY / P40732: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium

29% id,
89% cov

ARGD_ECOLI / P18335: Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli
Dtu / b3359: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli
argD / P18335: N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli

29% id,
88% cov

AZOBR_RS19025: acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense

31% id,
70% cov

ASC41_RS02745 WP_055435119.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

Q8NRE6: succinyldiaminopimelate transaminase (EC 2.6.1.17) from Corynebacterium glutamicum

25% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory