Curated BLAST for Genomes

 

Curated BLAST

Searching in Lacinutrix algicola AKS293 (GCF_001418085.1)

Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Lacinutrix algicola AKS293, or try another query

lysA ASC41_RS06840 WP_055435891.1: diaminopimelate decarboxylase
is similar to:
PaperBLAST

Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis

59% id,
97% cov

DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima

33% id,
99% cov

lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis

34% id,
94% cov

More...

ASC41_RS01415 WP_055434854.1: arginine decarboxylase
is similar to:
PaperBLAST

lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis

23% id,
97% cov

thrA ASC41_RS02630 WP_055435097.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

23% id,
71% cov

thrA ASC41_RS14495 WP_055437364.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

28% id,
51% cov

ASC41_RS09190 WP_055436340.1: aspartate kinase
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

32% id,
39% cov

ASC41_RS07585 WP_055436038.1: aspartate kinase
is similar to:
PaperBLAST

ABZR86_RS19560: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica

27% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory