Curated BLAST for Genomes

 

Curated BLAST

Searching in Lacinutrix algicola AKS293 (GCF_001418085.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Lacinutrix algicola AKS293, or try another query

tpiA ASC41_RS06475 WP_055435841.1: triose-phosphate isomerase
is similar to:		 PaperBLAST

TPIS_RABIT / P00939: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Oryctolagus cuniculus
P00939: triose-phosphate isomerase (EC 5.3.1.1) from Oryctolagus cuniculus

 47% id,
98% cov

TPIS_CHICK / P00940: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Gallus gallus
P00940: triose-phosphate isomerase (EC 5.3.1.1) from Gallus gallus

 47% id,
98% cov

TPIS_HUMAN / P60174: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Homo sapiens
TPI1 / P60174: Triosephosphate isomerase (EC 5.3.1.1) from Homo sapiens
P60174: triose-phosphate isomerase (EC 5.3.1.1) from Homo sapiens

 47% id,
98% cov

More...

ASC41_RS08425 WP_055436201.1: phosphoglycerate kinase
is similar to:		 PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

 52% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory