Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 59 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

aroE ABB28_RS10360 ABB28_10395 WP_057508550.1: shikimate dehydrogenase
is similar to:		 PaperBLAST

Q88RQ5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Pseudomonas putida

 45% id,
97% cov

AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli
AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
P15770: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Escherichia coli

 43% id,
98% cov

AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae

 42% id,
96% cov

More...

aroD ABB28_RS09905 ABB28_09935 WP_245625322.1: type I 3-dehydroquinate dehydratase
is similar to:		 PaperBLAST

A0A168S2H6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

 32% id,
44% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 32% id,
44% cov

A0A168S2G5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Vitis vinifera

 31% id,
45% cov

More...

hemA ABB28_RS07985 ABB28_08015 WP_057508127.1: glutamyl-tRNA reductase
is similar to:		 PaperBLAST

A0A5H2WVH6: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Eucalyptus camaldulensis

 27% id,
37% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

 27% id,
29% cov

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

 31% id,
23% cov

More...

ABB28_RS12600 ABB28_12635 WP_057508945.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

O27957: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Archaeoglobus fulgidus

 42% id,
24% cov

aroB ABB28_RS11280 ABB28_11320 WP_057508721.1: 3-dehydroquinate synthase
is similar to:		 PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

 37% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

 38% id,
12% cov

Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii

 36% id,
5% cov

aroA ABB28_RS00670 ABB28_00675 WP_057506776.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:		 PaperBLAST

Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii

 59% id,
1% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory