Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.3' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

thrA ABB28_RS00495 ABB28_00500 WP_245625232.1: bifunctional aspartate kinase/homoserine dehydrogenase I
is similar to:		 PaperBLAST

C1G1C3: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides brasiliensis

 43% id,
99% cov

C1GTZ6: homoserine dehydrogenase (EC 1.1.1.3) from Paracoccidioides lutzii

 43% id,
99% cov

DHOM_EMENI / Q5B998: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Emericella nidulans
AN2882: homoserine dehydrogenase; EC 1.1.1.3 from Emericella nidulans

 43% id,
97% cov

More...

ABB28_RS11205 ABB28_11245 WP_057508710.1: homoserine dehydrogenase
is similar to:		 PaperBLAST

DHOM_EMENI / Q5B998: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Emericella nidulans
AN2882: homoserine dehydrogenase; EC 1.1.1.3 from Emericella nidulans

 35% id,
99% cov

Q5AIA2: homoserine dehydrogenase (EC 1.1.1.3) from Candida albicans

 34% id,
98% cov

DHOM_YEAST / P31116: Homoserine dehydrogenase; HDH; EC 1.1.1.3 from Saccharomyces cerevisiae

 34% id,
98% cov

More...

ABB28_RS02115 ABB28_02125 WP_057507033.1: bifunctional aspartate kinase/diaminopimelate decarboxylase
is similar to:		 PaperBLAST

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

 30% id,
57% cov

AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

 32% id,
51% cov

O63067: homoserine dehydrogenase (EC 1.1.1.3) from Glycine max

 31% id,
51% cov

More...

proB ABB28_RS15350 ABB28_15390 WP_057687247.1: glutamate 5-kinase
is similar to:		 PaperBLAST

Q9WZ17: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Thermotoga maritima

 23% id,
28% cov

ThrD / b0002: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
thrA / P00561: fused aspartate kinase/homoserine dehydrogenase 1 (EC 2.7.2.4; EC 1.1.1.3) from Escherichia coli
P00561: homoserine dehydrogenase (EC 1.1.1.3); aspartate kinase (EC 2.7.2.4) from Escherichia coli

 30% id,
12% cov

AKH1_ARATH / Q9SA18: Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic; AK-HD 1; AK-HSDH 1; Beta-aspartyl phosphate homoserine 1; EC 2.7.2.4; EC 1.1.1.3 from Arabidopsis thaliana

 48% id,
5% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory