Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 30 curated entries in PaperBLAST's database that match '1.1.1.307' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

dkgB ABB28_RS02745 ABB28_02760 WP_057507148.1: 2,5-didehydrogluconate reductase DkgB
is similar to:
PaperBLAST

A0A455KZK8: D-xylose reductase (EC 1.1.1.307) from Thermomyces lanuginosus

34% id,
93% cov

C5J3R6: D-xylose reductase (EC 1.1.1.307) from Rasamsonia emersonii

34% id,
93% cov

I7HD84: D-xylose reductase (EC 1.1.1.307) from Rhizomucor pusillus

33% id,
92% cov

More...

ABB28_RS03210 ABB28_03235 WP_057507236.1: aldo/keto reductase
is similar to:
PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

31% id,
90% cov

A0A455KZK8: D-xylose reductase (EC 1.1.1.307) from Thermomyces lanuginosus

27% id,
94% cov

ABB28_RS02775 ABB28_02790 WP_057507154.1: aldo/keto reductase
is similar to:
PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

30% id,
85% cov

Q876L8: D-xylose reductase (EC 1.1.1.307) from Trichoderma reesei

29% id,
50% cov

G0SCE7: D-xylose reductase (EC 1.1.1.307) from Chaetomium thermophilum

27% id,
48% cov

More...

ABB28_RS03195 ABB28_03220 WP_057507233.1: aldo/keto reductase
is similar to:
PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

29% id,
80% cov

ABB28_RS06880 ABB28_06915 WP_057507935.1: aldo/keto reductase
is similar to:
PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis

30% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

89101-90387 (frame +1) on NZ_LDJK01000008.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_8, whole genome shotgun sequence
is similar to:
PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis
Also see hits to annotated proteins above

30% id,
94% cov

145171-146259 (frame -1) on NZ_LDJK01000007.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_7, whole genome shotgun sequence
is similar to:
PaperBLAST

F2YCN5: D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis
Also see hits to annotated proteins above

29% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory