Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.312' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS13215 ABB28_13255 WP_057509063.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

LIGC_SPHSK / Q9KWL3: 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; CHMS dehydrogenase; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase; EC 1.1.1.312 from Sphingobium sp.
ligC / Q9KWL3: LigC (EC 1.1.1.312) from Sphingobium sp.

27% id,
70% cov

ABB28_RS14600 ABB28_14640 WP_057509318.1: oxidoreductase
is similar to:
PaperBLAST

LIGC_SPHSK / Q9KWL3: 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; CHMS dehydrogenase; 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase; EC 1.1.1.312 from Sphingobium sp.
ligC / Q9KWL3: LigC (EC 1.1.1.312) from Sphingobium sp.

28% id,
57% cov

Q93PS4: 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase (EC 1.1.1.312) from Comamonas testosteroni

35% id,
40% cov

proD / Q75T27: α-hydroxy-γ-carboxymuconate ε-semialdehyde dehydrogenase subunit (EC 1.1.1.312) from Pseudomonas straminea

35% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory