Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.343' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

gnd ABB28_RS14605 ABB28_14645 WP_057509319.1: phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating)
is similar to:
PaperBLAST

A0A1J5NX54: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica

48% id,
100% cov

6PGDH_GLUOX / G5EBD7: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Gluconobacter oxydans
G5EBD7: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconobacter oxydans

48% id,
100% cov

A9H324: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconacetobacter diazotrophicus

47% id,
100% cov

More...

mmsB ABB28_RS04900 ABB28_04935 WP_057507560.1: 3-hydroxyisobutyrate dehydrogenase
is similar to:
PaperBLAST

6PGDH_GLUOX / G5EBD7: 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Gluconobacter oxydans
G5EBD7: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconobacter oxydans

29% id,
63% cov

A9H324: phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconacetobacter diazotrophicus

30% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory