Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 60 curated entries in PaperBLAST's database that match '1.1.1.85' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS10115 ABB28_10145 WP_057508507.1: tartrate dehydrogenase
is similar to:
PaperBLAST

YeaU / b1800: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli
dmlA / P76251: D-malate/3-isopropylmalate dehydrogenase (decarboxylating) (EC 1.1.1.83; EC 1.1.1.85; EC 1.1.1.93) from Escherichia coli

71% id,
99% cov

P94929: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Mycobacterium tuberculosis

44% id,
100% cov

LEU3_MYCTU / P9WKK9: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Mycobacterium tuberculosis

44% id,
100% cov

More...

leuB ABB28_RS14510 ABB28_14550 WP_057509305.1: 3-isopropylmalate dehydrogenase
is similar to:
PaperBLAST

LEU3_HEYCO / P12010: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Heyndrickxia coagulans

55% id,
98% cov

LEU3_THET8 / Q5SIY4: 3-isopropylmalate dehydrogenase; 3-IPM-DH; Beta-IPM dehydrogenase; IMDH; EC 1.1.1.85 from Thermus thermophilus
Q5SIY4: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus thermophilus

53% id,
99% cov

P24098: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Thermus aquaticus

53% id,
100% cov

More...

ABB28_RS01900 ABB28_01910 WP_057506985.1: isocitrate dehydrogenase
is similar to:
PaperBLAST

LEU3_METJA / Q58130: 3-isopropylmalate/3-methylmalate dehydrogenase; 3-isopropylmalate dehydrogenase; 3-IPM-DH; IMDH; IPMDH; Beta-IPM dehydrogenase; D-malate dehydrogenase [decarboxylating]; EC 1.1.1.85; EC 1.1.1.n5; EC 1.1.1.83 from Methanocaldococcus jannaschii
MJ0720 / Q58130: 3-isopropylmalate dehydrogenase subunit (EC 1.1.1.85) from Methanocaldococcus jannaschii

42% id,
99% cov

LEU3_HALVD / D4GYE8: 3-isopropylmalate dehydrogenase; EC 1.1.1.85 from Haloferax volcanii

41% id,
100% cov

Q4JB37: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) from Sulfolobus acidocaldarius

39% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory