Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 10 curated entries in PaperBLAST's database that match '1.1.5.2' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS16160 ABB28_16205 WP_057687398.1: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

42% id,
100% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

41% id,
98% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

41% id,
98% cov

ABB28_RS05160 ABB28_05195 WP_245625285.1: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

D4P700: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis

40% id,
98% cov

DHG_ECOLI / P15877: Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli
Gcd / b0124: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli
gcd / GB|BAB96699.1: quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli
gcd / P15877: quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli

40% id,
99% cov

A0A0J6JEN3: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pseudomonas taetrolens

39% id,
99% cov

ABB28_RS11575 ABB28_11615 WP_057508775.1: PQQ-dependent sugar dehydrogenase
is similar to:
PaperBLAST

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

36% id,
96% cov

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

38% id,
90% cov

DHGB_ACICA / P13650: Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus

29% id,
63% cov

ABB28_RS08440 ABB28_08470 WP_057508207.1: PQQ-dependent sugar dehydrogenase
is similar to:
PaperBLAST

Q8ZUN8: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum

32% id,
95% cov

I7A144: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus

34% id,
88% cov

DHGB_ACICA / P13650: Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650: glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus

32% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory