Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 23 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

pcaH ABB28_RS09880 ABB28_09910 WP_057508465.1: protocatechuate 3,4-dioxygenase subunit beta
is similar to:
PaperBLAST

HQD2_CANAL / P86029: Catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans
orf19.4567: catechol 1,2-dioxygenase; EC 1.13.11.1 from Candida albicans

33% id,
53% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

37% id,
42% cov

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

33% id,
44% cov

pcaG ABB28_RS09875 ABB28_09905 WP_057508464.1: protocatechuate 3,4-dioxygenase subunit alpha
is similar to:
PaperBLAST

Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus

31% id,
54% cov

Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp.

29% id,
50% cov

PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae

29% id,
46% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory