Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 4 curated entries in PaperBLAST's database that match '1.2.1.85' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

betB ABB28_RS16890 ABB28_16935 WP_057687530.1: betaine-aldehyde dehydrogenase
is similar to:
PaperBLAST

praB / C4TP02: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Paenibacillus sp.

42% id,
99% cov

Q1XGK8: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Pseudomonas putida

39% id,
99% cov

XYLG_PSEPU / P23105: 2-hydroxymuconic semialdehyde dehydrogenase; HMSD; EC 1.2.1.85 from Pseudomonas putida
xylG / P23105: 2-hydroxymuconate semialdehyde dehydrogenase subunit (EC 1.2.1.85) from Pseudomonas putida

38% id,
99% cov

ABB28_RS04920 ABB28_04955 WP_057507564.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

praB / C4TP02: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Paenibacillus sp.

32% id,
97% cov

XYLG_PSEPU / P23105: 2-hydroxymuconic semialdehyde dehydrogenase; HMSD; EC 1.2.1.85 from Pseudomonas putida
xylG / P23105: 2-hydroxymuconate semialdehyde dehydrogenase subunit (EC 1.2.1.85) from Pseudomonas putida

31% id,
99% cov

Q1XGK8: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Pseudomonas putida

30% id,
99% cov

ABB28_RS05980 ABB28_06015 WP_057507768.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Q1XGK8: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Pseudomonas putida

31% id,
96% cov

praB / C4TP02: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Paenibacillus sp.

32% id,
92% cov

XYLG_PSEPU / P23105: 2-hydroxymuconic semialdehyde dehydrogenase; HMSD; EC 1.2.1.85 from Pseudomonas putida
xylG / P23105: 2-hydroxymuconate semialdehyde dehydrogenase subunit (EC 1.2.1.85) from Pseudomonas putida

30% id,
95% cov

ABB28_RS00370 ABB28_00375 WP_057506719.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

XYLG_PSEPU / P23105: 2-hydroxymuconic semialdehyde dehydrogenase; HMSD; EC 1.2.1.85 from Pseudomonas putida
xylG / P23105: 2-hydroxymuconate semialdehyde dehydrogenase subunit (EC 1.2.1.85) from Pseudomonas putida

30% id,
96% cov

Q1XGK8: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Pseudomonas putida

29% id,
96% cov

ABB28_RS02945 ABB28_02960 WP_057507192.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

praB / C4TP02: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Paenibacillus sp.

30% id,
92% cov

XYLG_PSEPU / P23105: 2-hydroxymuconic semialdehyde dehydrogenase; HMSD; EC 1.2.1.85 from Pseudomonas putida
xylG / P23105: 2-hydroxymuconate semialdehyde dehydrogenase subunit (EC 1.2.1.85) from Pseudomonas putida

30% id,
91% cov

Q1XGK8: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Pseudomonas putida

30% id,
91% cov

putA ABB28_RS08325 ABB28_08355 WP_057508189.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:
PaperBLAST

Q1XGK8: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Pseudomonas putida

33% id,
63% cov

XYLG_PSEPU / P23105: 2-hydroxymuconic semialdehyde dehydrogenase; HMSD; EC 1.2.1.85 from Pseudomonas putida
xylG / P23105: 2-hydroxymuconate semialdehyde dehydrogenase subunit (EC 1.2.1.85) from Pseudomonas putida

32% id,
64% cov

praB / C4TP02: 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) from Paenibacillus sp.

30% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory