Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 33 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS13240 ABB28_13280 WP_057509068.1: GMC family oxidoreductase
is similar to:
PaperBLAST

OXDA2_CRYGR / A0A095C6S0: D-amino-acid oxidase 2; DAAO; DAMOX; DAO; CgDAO2; EC 1.4.3.3 from Cryptococcus gattii

27% id,
41% cov

ABB28_RS06665 ABB28_06700 WP_057507894.1: D-amino acid dehydrogenase
is similar to:
PaperBLAST

OXDA_RHOTO / P80324: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rhodotorula toruloides
P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

40% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory