Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 75 curated entries in PaperBLAST's database that match '2.6.1.42' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS07920 ABB28_07950 WP_042613067.1: branched-chain amino acid aminotransferase
is similar to:		 PaperBLAST

ILVE_MYCS2 / A0R066: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycolicibacterium smegmatis
A0R066: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycolicibacterium smegmatis

 57% id,
100% cov

ILVE_MYCTU / P9WQ75: Branched-chain-amino-acid aminotransferase; BCAT; EC 2.6.1.42 from Mycobacterium tuberculosis
P9WQ75: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Mycobacterium tuberculosis

 56% id,
100% cov

RR42_RS25890: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Cupriavidus basilensis

 50% id,
99% cov

More...

ABB28_RS12960 ABB28_13000 WP_057509011.1: amino acid aminotransferase
is similar to:		 PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

 50% id,
100% cov

ABB28_RS06755 ABB28_06790 WP_057507911.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 27% id,
98% cov

AZOBR_RS06555: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Azospirillum brasilense

 27% id,
95% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 25% id,
91% cov

ABB28_RS16060 ABB28_16105 WP_245625358.1: PLP-dependent aminotransferase family protein
is similar to:		 PaperBLAST

Ac3H11_1358: L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp.

 29% id,
89% cov

A0A060PQX5: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermococcus sp.

 30% id,
79% cov

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 33% id,
67% cov

ABB28_RS13935 ABB28_13975 WP_057509206.1: aminotransferase class IV
is similar to:		 PaperBLAST

F2L0W0: branched-chain-amino-acid transaminase (EC 2.6.1.42) from Thermoproteus uzoniensis

 27% id,
94% cov

BPHYT_RS16285: Branched-chain amino acid aminotransferase (EC 2.6.1.42) from Burkholderia phytofirmans

 29% id,
41% cov

ABB28_RS11865 ABB28_11900 WP_057508832.1: pyridoxal phosphate-dependent aminotransferase
is similar to:		 PaperBLAST

BWI76_RS24235: Branched-chain-amino-acid transaminase (EC 2.6.1.42) from Klebsiella michiganensis

 28% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory