Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 29 curated entries in PaperBLAST's database that match '2.7.1.17' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

xylB ABB28_RS08205 ABB28_08235 WP_245625313.1: xylulokinase
is similar to:
PaperBLAST

mtlY / Q4KC52: xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

46% id,
100% cov

Pf6N2E2_805: Xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

44% id,
98% cov

AO356_27695: Xylulose kinase (EC 2.7.1.17) from Pseudomonas fluorescens

44% id,
98% cov

More...

glpK ABB28_RS07845 ABB28_07875 WP_057508106.1: glycerol kinase GlpK
is similar to:
PaperBLAST

C7NMH3: xylulokinase (EC 2.7.1.17) from Halorhabdus utahensis

26% id,
90% cov

W8VYH1: xylulokinase (EC 2.7.1.17) from Mucor circinelloides

24% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory