Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

glk ABB28_RS08110 ABB28_08140 WP_057508150.1: glucokinase
is similar to:
PaperBLAST

GLK_ECOLI / P0A6V8: Glucokinase; Glucose kinase; EC 2.7.1.2 from Escherichia coli
Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli

45% id,
96% cov

PS417_22685: Glucokinase (EC 2.7.1.2) from Pseudomonas simiae

38% id,
97% cov

Dshi_1655: glucokinase (EC 2.7.1.2) from Dinoroseobacter shibae

31% id,
99% cov

More...

ABB28_RS14545 ABB28_14585 WP_057509310.1: glucokinase family protein
is similar to:
PaperBLAST

Dshi_1655: glucokinase (EC 2.7.1.2) from Dinoroseobacter shibae

34% id,
98% cov

GLK_ECOLI / P0A6V8: Glucokinase; Glucose kinase; EC 2.7.1.2 from Escherichia coli
Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli

34% id,
95% cov

PS417_22685: Glucokinase (EC 2.7.1.2) from Pseudomonas simiae

33% id,
96% cov

More...

ABB28_RS00795 ABB28_00800 WP_245625233.1: glucokinase
is similar to:
PaperBLAST

GLK_ECOLI / P0A6V8: Glucokinase; Glucose kinase; EC 2.7.1.2 from Escherichia coli
Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli

33% id,
95% cov

Dshi_1655: glucokinase (EC 2.7.1.2) from Dinoroseobacter shibae

31% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory