Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 6 curated entries in PaperBLAST's database that match '2.7.1.229' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS12320 ABB28_12355 WP_057508915.1: carbohydrate kinase
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi

33% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

13711-15306 (frame +1) on NZ_LDJK01000056.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_56, whole genome shotgun sequence
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi
Also see hits to annotated proteins above

25% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory