Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.58' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS13165 ABB28_13205 WP_057509053.1: 2-dehydro-3-deoxygalactonokinase
is similar to:
PaperBLAST

N515DRAFT_1233: 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Dyella japonica

42% id,
96% cov

A6TFZ6: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Klebsiella pneumoniae

39% id,
97% cov

HSERO_RS05160: 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Herbaspirillum seropedicae

38% id,
95% cov

More...

ABB28_RS12320 ABB28_12355 WP_057508915.1: carbohydrate kinase
is similar to:
PaperBLAST

KDGK2_HALVD / D4GR05: 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxygalactonate kinase; KDGal kinase; KDGK-2; EC 2.7.1.58 from Haloferax volcanii
D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

30% id,
96% cov

ABB28_RS12915 ABB28_12955 WP_057509003.1: sugar kinase
is similar to:
PaperBLAST

KDGK2_HALVD / D4GR05: 2-dehydro-3-deoxygalactonokinase; 2-keto-3-deoxygalactonate kinase; KDGal kinase; KDGK-2; EC 2.7.1.58 from Haloferax volcanii
D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

35% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory