Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 19 curated entries in PaperBLAST's database that match '3.1.2.4' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS05820 ABB28_05855 WP_057507779.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

40% id,
100% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

34% id,
75% cov

PS417_13835: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas simiae

36% id,
59% cov

More...

ABB28_RS04905 ABB28_04940 WP_057507561.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

40% id,
95% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

40% id,
92% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

39% id,
94% cov

More...

ABB28_RS13605 ABB28_13645 WP_057509133.1: enoyl-CoA hydratase-related protein
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

33% id,
98% cov

C3KM96: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Sinorhizobium fredii

27% id,
62% cov

ABB28_RS04910 ABB28_04945 WP_057507562.1: enoyl-CoA hydratase
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

31% id,
99% cov

C3KM96: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Sinorhizobium fredii

28% id,
70% cov

ABB28_RS03505 ABB28_03530 WP_057507300.1: 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

33% id,
77% cov

ABB28_RS12065 ABB28_12100 WP_057508866.1: enoyl-CoA hydratase/isomerase family protein
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

28% id,
71% cov

ABB28_RS00235 ABB28_00240 WP_057506695.1: 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

23% id,
82% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

25% id,
38% cov

ABB28_RS16875 ABB28_16920 WP_057687527.1: crotonase/enoyl-CoA hydratase family protein
is similar to:
PaperBLAST

acuK / C8YX87: acryloyl-CoA hydratase/3-hydroxypropanoyl-CoA hydrolase (EC 3.1.2.4; EC 4.2.1.116) from Halomonas sp.

31% id,
58% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

33% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory