Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

ABB28_RS05105 ABB28_05140 WP_057507603.1: NAD(P)-binding protein
is similar to:
PaperBLAST

AFA35120.1: β-galactosidase (BgalH) (EC 3.2.1.23)

38% id,
85% cov

ABB28_RS10755 ABB28_10790 WP_083492001.1: glycoside hydrolase family 3 C-terminal domain-containing protein
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

30% id,
86% cov

ABB28_RS08430 ABB28_08460 WP_057508205.1: glycoside hydrolase family 3 N-terminal domain-containing protein
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

31% id,
83% cov

ABB28_RS12330 ABB28_12365 WP_057508917.1: glycoside hydrolase family 2 protein
is similar to:
PaperBLAST

ABF72116.1: β-galactosidase (Lreu?gal) (LacL + LacM) (EC 3.2.1.23)
lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri
Q19R72: beta-galactosidase (EC 3.2.1.23) from Limosilactobacillus reuteri

21% id,
57% cov

AAQ19029.1: β-galactosidase (LacZ) (EC 3.2.1.23)
Q7WTU5: beta-galactosidase (EC 3.2.1.23) from Arthrobacter sp.

23% id,
44% cov

BAA20536.1: β-galactosidase (LacL) (EC 3.2.1.23)

21% id,
41% cov

More...

ABB28_RS10090 ABB28_10120 WP_057508502.1: hypothetical protein
is similar to:
PaperBLAST

ABA39423.1: β-galactosidase (GalD) (EC 3.2.1.23)

44% id,
11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory