Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 16 curated entries in PaperBLAST's database that match '3.5.2.7' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

hutI ABB28_RS00625 ABB28_00630 WP_057506767.1: imidazolonepropionase
is similar to:
PaperBLAST

Ga0059261_3964: Imidazolonepropionase (EC 3.5.2.7) from Sphingomonas koreensis

62% id,
99% cov

RR42_RS16905: Imidazolonepropionase (EC 3.5.2.7) from Cupriavidus basilensis

59% id,
95% cov

HUTI_AGRFC / Q8U8Z6: Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum
Q8U8Z6: imidazolonepropionase (EC 3.5.2.7) from Agrobacterium tumefaciens

57% id,
96% cov

More...

ABB28_RS09610 ABB28_09640 WP_057508420.1: amidohydrolase
is similar to:
PaperBLAST

PGA1_c36350: Imidazolonepropionase (EC 3.5.2.7) from Phaeobacter inhibens

24% id,
92% cov

HUTI_AGRFC / Q8U8Z6: Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum
Q8U8Z6: imidazolonepropionase (EC 3.5.2.7) from Agrobacterium tumefaciens

26% id,
50% cov

RR42_RS16905: Imidazolonepropionase (EC 3.5.2.7) from Cupriavidus basilensis

29% id,
34% cov

More...

ABB28_RS01125 ABB28_01130 WP_057506863.1: TRZ/ATZ family hydrolase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

28% id,
45% cov

ABB28_RS04260 ABB28_04295 WP_211260364.1: amidohydrolase
is similar to:
PaperBLAST

HUTI_BACSU / P42084: Imidazolonepropionase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Bacillus subtilis
P42084: imidazolonepropionase (EC 3.5.2.7) from Bacillus subtilis

32% id,
25% cov

HUTI_AGRFC / Q8U8Z6: Imidazolonepropionase; Imidazolone-5-propanoate hydrolase; Imidazolone-5-propionate hydrolase; EC 3.5.2.7 from Agrobacterium fabrum
Q8U8Z6: imidazolonepropionase (EC 3.5.2.7) from Agrobacterium tumefaciens

33% id,
21% cov

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti

33% id,
19% cov

ABB28_RS10800 ABB28_10835 WP_057508635.1: amidohydrolase family protein
is similar to:
PaperBLAST

Pf1N1B4_1579: Imidazolonepropionase (EC 3.5.2.7) from Pseudomonas fluorescens

34% id,
22% cov

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti

33% id,
18% cov

ABB28_RS09615 ABB28_09645 WP_057508421.1: amidohydrolase family protein
is similar to:
PaperBLAST

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti

31% id,
22% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

48% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

69120-71120 (frame +3) on NZ_LDJK01000012.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_12, whole genome shotgun sequence
is similar to:
PaperBLAST

SM_b21166: Imidazolonepropionase (EC 3.5.2.7) from Sinorhizobium meliloti
Also see hits to annotated proteins above

30% id,
29% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory