Curated BLAST for Genomes

 

Curated BLAST

Searching in Stenotrophomonas chelatiphaga DSM 21508 (GCF_001431535.1)

Found 12 curated entries in PaperBLAST's database that match '3.5.3.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Stenotrophomonas chelatiphaga DSM 21508, or try another query

rocF ABB28_RS04805 ABB28_04840 WP_057507546.1: arginase
is similar to:
PaperBLAST

GBU1_KLULA / Q6CIB4: Guanidinobutyrase; EC 3.5.3.7 from Kluyveromyces lactis
KlGBU1 / Q6CIB4: guanidinobutyrase (EC 3.5.3.7) from Kluyveromyces lactis

26% id,
74% cov

GBUA_PSEAE / Q9I3S3: Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa
gbuA / Q9I3S3: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas aeruginosa
Q9I3S3: guanidinobutyrase (EC 3.5.3.7) from Pseudomonas aeruginosa

35% id,
23% cov

gbuA / Q88EE2: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida

35% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

30626-31570 (frame -1) on NZ_LDJK01000013.1 Stenotrophomonas chelatiphaga strain DSM 21508 contig_13, whole genome shotgun sequence
is similar to:
PaperBLAST

GDAH_HUMAN / Q9BSE5: Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens

28% id,
83% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory